A census of human RNA-binding proteins, Nat. Rev. Genet, vol.15, pp.829-845, 2014. ,
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts, Mol. Cell, vol.46, pp.674-690, 2012. ,
, Nucleic Acids Research, vol.46, issue.21, p.11565, 2018.
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins, Cell, vol.149, pp.1393-1406, 2012. ,
The clothes make the mRNA: Past and present trends in mRNP fashions, Annu. Rev. Biochem, vol.84, pp.325-354, 2015. ,
RNA-binding proteins in Mendelian disease, Trends Genet, vol.29, pp.318-327, 2013. ,
CLIP identifies Nova-regulated RNA networks in the brain, Science, vol.302, pp.1212-1215, 2003. ,
HITS-CLIP yields genome-wide insights into brain alternative RNA processing, Nature, vol.456, pp.464-469, 2008. ,
Advances in CLIP technologies for studies of Protein-RNA interactions, Mol. Cell, vol.69, pp.354-369, 2018. ,
HITS-CLIP: panoramic views of protein-RNA regulation in living cells, Wiley Interdiscip. Rev. RNA, vol.1, pp.266-286, 2010. ,
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP, 2010. ,
, Cell, vol.141, pp.129-141
A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles, Methods, vol.26, pp.170-181, 2002. ,
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data, Nat. Biotechnol, vol.29, pp.607-614, 2011. ,
Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP, Nat. Commun, vol.6, p.7921, 2015. ,
2010) iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution, Nat. Struct. Mol. Biol, vol.17, pp.909-915 ,
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP), 2016. ,
, Nat. Methods, vol.13, pp.508-514
) irCLIP platform for efficient characterization of protein-RNA interactions, Nat. Methods, vol.13, pp.489-492, 2016. ,
HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism, Cell Rep, vol.6, pp.1139-1152, 2014. ,
Redesigning CLIP for efficiency, accuracy and speed, Nat. Methods, vol.13, pp.482-483, 2016. ,
Insights into the design and interpretation of iCLIP experiments, Genome Biol, vol.18, p.7, 2017. ,
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs, Proc. Natl. Acad. Sci. U.S.A, vol.106, pp.9613-9618, 2009. ,
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions, Genome Biol, vol.13, p.67, 2012. ,
Determinants of affinity and specificity in RNA-binding proteins, Curr. Opin. Struct. Biol, vol.38, pp.83-91, 2016. ,
The exon junction complex as a node of post-transcriptional networks, Nat. Rev. Mol. Cell Biol, vol.17, pp.41-54, 2016. ,
The multiple lives of NMD factors: balancing roles in gene and genome regulation, Nat. Rev. Genet, vol.9, pp.699-712, 2008. ,
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system, Cell, vol.155, pp.1479-1491, 2013. ,
Enzymatic assembly of DNA molecules up to several hundred kilobases, Nat. Methods, vol.6, pp.343-345, 2009. ,
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex, Nat. Struct. Mol. Biol, vol.19, pp.1124-1131, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00982626
From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes, BMC Genomics, p.68, 2014. ,
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data, Bioinformatics, vol.33, pp.566-567, 2017. ,
CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins, pp.50-59, 2017. ,
CRISPR-Cas systems for editing, regulating and targeting genomes, Nat. Biotechnol, vol.32, pp.347-355, 2014. ,
High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing, Genome Biol, vol.14, p.109, 2013. ,
Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay, Genome Res, vol.23, pp.1636-1650, 2013. ,
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs, Nat. Struct. Mol. Biol, vol.20, pp.936-943, 2013. ,