Replication timing-related and gene body-specific methylation of active human genes, Human Molecular Genetics, vol.20, issue.4, pp.670-680, 2011. ,
DOI : 10.1093/hmg/ddq513
Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer, Human Molecular Genetics, vol.10, issue.7, pp.687-692, 2001. ,
DOI : 10.1093/hmg/10.7.687
The Mammalian Epigenome, Cell, vol.128, issue.4, pp.669-681, 2007. ,
DOI : 10.1016/j.cell.2007.01.033
Epigenetics and bacterial infections. Cold Spring Harb, 2012. ,
Human BAHD1 promotes heterochromatic gene silencing, Proceedings of the National Academy of Sciences, vol.106, issue.33, pp.13826-13831, 2009. ,
DOI : 10.1073/pnas.0901259106
URL : https://hal.archives-ouvertes.fr/pasteur-00411478
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias, Bioinformatics, vol.19, issue.2, pp.185-193, 2003. ,
DOI : 10.1093/bioinformatics/19.2.185
On how mammalian transcription factors recognize methylated DNA, Epigenetics, vol.18, issue.2, pp.131-137, 2013. ,
DOI : 10.1093/nar/gkh739
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses, Genes & Development, vol.25, issue.18, pp.1915-1927, 2011. ,
DOI : 10.1101/gad.17446611
X-inactivation profile reveals extensive variability in X-linked gene expression in females Linking DNA methylation and histone modification: patterns and paradigms, Nature Nat. Rev. Genet, vol.434, issue.10, pp.400-404, 1038. ,
CpG islands and the regulation of transcription doi: 10.1101/gad An integrated encyclopedia of DNA elements in the human genome Cdyl, a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2, Genes Dev. ENCODE Project Consortium Nature Mol. Cell. Biol, vol.25, issue.33, pp.1010-1022, 1128. ,
Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription, The EMBO Journal, vol.20, issue.10, pp.2536-2544, 2001. ,
DOI : 10.1093/emboj/20.10.2536
The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase, Nucleic Acids Research, vol.31, issue.9, pp.2305-2312, 2003. ,
DOI : 10.1093/nar/gkg332
XIST RNA Associates with Specific Regions of the Inactive X Chromatin, Journal of Biological Chemistry, vol.275, issue.47, pp.36491-36494, 2000. ,
DOI : 10.1074/jbc.C000409200
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions, Nature, vol.38, issue.7197, pp.948-951, 2008. ,
DOI : 10.1038/nature06947
Gene Body-Specific Methylation on the Active X Chromosome, Science, vol.315, issue.5815, pp.1141-1143, 2007. ,
DOI : 10.1126/science.1136352
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer, Genome Research, vol.22, issue.2, pp.246-258, 2012. ,
DOI : 10.1101/gr.125872.111
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues, Nature Genetics, vol.99, issue.10, pp.1198-1206, 2013. ,
DOI : 10.1186/gb-2005-6-4-r33
Large chromatin domains in pluripotent and differentiated cells, Acta Biochimica et Biophysica Sinica, vol.44, issue.1, pp.48-53, 2012. ,
DOI : 10.1093/abbs/gmr108
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores, Nature Genetics, vol.57, issue.2, pp.178-186, 2009. ,
DOI : 10.1093/bioinformatics/btl567
Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays, Bioinformatics, vol.19, issue.15, pp.1945-1951, 2003. ,
DOI : 10.1093/bioinformatics/btg264
Cancer epigenetics comes of age, Nature Genetics, vol.21, issue.2, pp.163-167, 1999. ,
DOI : 10.1038/5947
Circos: An information aesthetic for comparative genomics, Genome Research, vol.19, issue.9, pp.1639-1645, 2009. ,
DOI : 10.1101/gr.092759.109
Cancer biology and NuRD: a multifaceted chromatin remodelling complex, Nature Reviews Cancer, vol.16, issue.8, pp.588-596, 2011. ,
DOI : 10.1038/nrc3091
Principles and challenges of genome-wide DNA methylation analysis, Nature Reviews Genetics, vol.36, issue.3, pp.191-203, 1038. ,
DOI : 10.1038/nrg2732
A Bacterial Protein Targets the BAHD1 Chromatin Complex to Stimulate Type III Interferon Response, Science, vol.331, issue.6022, pp.1319-1321, 2011. ,
DOI : 10.1126/science.1200120
URL : https://hal.archives-ouvertes.fr/cea-00819299
Suv39h-Mediated Histone H3 Lysine 9 Methylation Directs DNA Methylation to Major Satellite Repeats at Pericentric Heterochromatin, Current Biology, vol.13, issue.14, pp.1192-1200, 2003. ,
DOI : 10.1016/S0960-9822(03)00432-9
Role for DNA methylation in genomic imprinting, Nature, vol.366, issue.6453, pp.362-365, 1993. ,
DOI : 10.1038/366362a0
The Histone Methyltransferase SETDB1 and the DNA Methyltransferase DNMT3A Interact Directly and Localize to Promoters Silenced in Cancer Cells, Journal of Biological Chemistry, vol.281, issue.28, 2006. ,
DOI : 10.1074/jbc.M513249200
The DNA Methylome of Human Peripheral Blood Mononuclear Cells, PLoS Biology, vol.24, issue.11, 2010. ,
DOI : 10.1371/journal.pbio.1000533.s020
Human DNA methylomes at base resolution show widespread epigenomic differences, Nature, vol.10, issue.7271, pp.315-322, 2009. ,
DOI : 10.1038/nature08514
Genome regulation at the peripheral zone: lamina associated domains in development and disease, Current Opinion in Genetics & Development, vol.25, pp.50-61, 2014. ,
DOI : 10.1016/j.gde.2013.11.021
The Mbd1-Atf7ip-Setdb1 pathway contributes to the maintenance of X chromosome inactivation, Epigenetics & Chromatin, vol.7, issue.1, pp.12-22, 2014. ,
DOI : 10.1186/1756-8935-7-12
MBD3, a Component of the NuRD Complex, Facilitates Chromatin Alteration and Deposition of Epigenetic Marks, Molecular and Cellular Biology, vol.28, issue.19, pp.5912-5923, 1128. ,
DOI : 10.1128/MCB.00467-08
Exposing the DNA methylome iceberg, Trends in Biochemical Sciences, vol.36, pp.381-387, 2011. ,
DOI : 10.1016/j.tibs.2011.03.002
Chromatin Structure and Nuclear Organization Dynamics during X-Chromosome Inactivation, Cold Spring Harbor Symposia on Quantitative Biology, vol.75, issue.0, pp.333-344, 2010. ,
DOI : 10.1101/sqb.2010.75.032
URL : https://hal.archives-ouvertes.fr/hal-00585602
Nucleolus and nuclear periphery: Velcro for heterochromatin, Current Opinion in Cell Biology, vol.28, pp.54-60, 2014. ,
DOI : 10.1016/j.ceb.2014.03.001
Recent advances in X-chromosome inactivation research, Current Opinion in Cell Biology, vol.24, issue.6, 2012. ,
DOI : 10.1016/j.ceb.2012.10.007
Analysis of methylation and distribution of CpG sequences on human active and inactive X chromosomes by in situ nick translation, Chromosoma, vol.81, issue.1, pp.18-23, 1990. ,
DOI : 10.1007/BF01737285
In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions, Molecular Cell, vol.44, issue.3, pp.361-372, 2011. ,
DOI : 10.1016/j.molcel.2011.08.032
Integrative analysis of 111 reference human epigenomes DNA methylation and human disease edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Targeting of EZH2 to a defined genomic site is sufficient for recruitment of Dnmt3a but not de novo DNA methylation, Nature Nat. Rev. Genet. Bioinformatics Epigenetics, vol.518, issue.4, pp.317-330, 2005. ,
Global, comparative analysis of tissue-specific promoter CpG methylation, Genomics, vol.90, issue.3, pp.314-323, 2007. ,
DOI : 10.1016/j.ygeno.2007.04.011
DNA methylation profiles of human active and inactive X chromosomes, Genome Research, vol.21, issue.10, pp.1592-1600, 2011. ,
DOI : 10.1101/gr.112680.110
Developmental programming of CpG island methylation profiles in the human genome, Nature Structural & Molecular Biology, vol.6, issue.5, pp.564-571, 2009. ,
DOI : 10.1126/science.1116447
DNA methylation landscapes: provocative insights from epigenomics Inactive X chromosome has the highest concentration of unmethylated Hha I sites, Nat. Rev. Genet Proc. Natl. Acad. Sci. U.S.A, vol.9, issue.85, pp.465-476, 1988. ,
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells, Nature Genetics, vol.32, issue.8, pp.853-862, 1038. ,
DOI : 10.1038/ng1598
A Y2H-seq approach defines the human protein methyltransferase interactome, Nature Methods, vol.284, issue.4, pp.339-342, 2013. ,
DOI : 10.1093/embo-reports/kvf052
Single base???resolution methylome of the silkworm reveals a sparse epigenomic map, Nature Biotechnology, vol.24, issue.5, pp.516-520, 2010. ,
DOI : 10.1038/nbt.1626
A signal-noise model for significance analysis of ChIP-seq with negative control, Bioinformatics, vol.26, issue.9, pp.1199-1204, 2010. ,
DOI : 10.1093/bioinformatics/btq128
Genes That Escape X-Inactivation in Humans Have High Intraspecific Variability in Expression, Are Associated with Mental Impairment but Are Not Slow Evolving, Molecular Biology and Evolution, vol.30, issue.12, pp.2588-2601, 2013. ,
DOI : 10.1093/molbev/mst148
DNA Methylation Analysis of Chromosome 21 Gene Promoters at Single Base Pair and Single Allele Resolution, PLoS Genetics, vol.36, issue.3, 2009. ,
DOI : 10.1371/journal.pgen.1000438.s006
Charting a dynamic DNA methylation landscape of the human genome, Nature, vol.18, issue.7463, pp.477-481, 1038. ,
DOI : 10.1038/nature12433